#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00522/HGDP00522.cram --algo AlignmentStat HGDP/HGDP00522/QCmetrics/HGDP00522.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	393531815	393531815	1.000000	0	393098605	0.998899	58627119443	364393619	54688037446	53280648941	0.000000	0.005395	0.004567	0.000220	151.000000	391358260	0.995573	0	0.499729	0.022773	0.000003	
SECOND_OF_PAIR	393531815	393531815	1.000000	0	391389618	0.994556	56963027984	361773284	53269153981	49060777324	0.000000	0.012618	0.011787	0.000207	151.000000	391358260	0.999920	0	0.499497	0.024488	0.000800	
PAIR	787063630	787063630	1.000000	0	784488223	0.996728	115590147427	726166903	107957191427	102341426265	0.000000	0.008954	0.008129	0.000214	151.000000	782716520	0.997742	0	0.499613	0.023629	0.000401