#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00523/HGDP00523.cram --algo AlignmentStat HGDP/HGDP00523/QCmetrics/HGDP00523.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398612123	398612123	1.000000	0	397882044	0.998168	59386304849	373925749	56104464120	54544932371	0.000000	0.005389	0.004733	0.000213	151.000000	395713029	0.994549	0	0.499961	0.019384	0.000005	
SECOND_OF_PAIR	398612123	398612123	1.000000	0	395747257	0.992813	57601474198	370803853	54519769035	49892777266	1.000000	0.013368	0.012738	0.000201	151.000000	395713029	0.999914	0	0.499523	0.020728	0.001568	
PAIR	797224246	797224246	1.000000	0	793629301	0.995491	116987779047	744729602	110624233155	104437709637	0.000000	0.009317	0.008678	0.000207	151.000000	791426058	0.997224	0	0.499743	0.020054	0.000787