#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00524/HGDP00524.cram --algo AlignmentStat HGDP/HGDP00524/QCmetrics/HGDP00524.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	417668051	417668051	1.000000	0	412352455	0.987273	61490256921	387097683	58025242879	56351301606	0.000000	0.005623	0.004955	0.000216	151.000000	410768536	0.996159	0	0.499971	0.019494	0.000043	
SECOND_OF_PAIR	417668051	417668051	1.000000	0	410892963	0.983779	60012615049	384726942	56741249980	52536001717	0.000000	0.011897	0.011230	0.000206	151.000000	410768536	0.999697	0	0.499553	0.020903	0.012024	
PAIR	835336102	835336102	1.000000	0	823245418	0.985526	121502871970	771824625	114766492859	108887303323	0.000000	0.008722	0.008058	0.000211	151.000000	821537072	0.997925	0	0.499762	0.020197	0.006034