#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00525/HGDP00525.cram --algo AlignmentStat HGDP/HGDP00525/QCmetrics/HGDP00525.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422923387	422923387	1.000000	0	420756861	0.994877	62768161374	392647304	58887732851	57271742408	0.000000	0.005449	0.004678	0.000219	151.000000	418958466	0.995726	0	0.499908	0.021116	0.000013	
SECOND_OF_PAIR	422923387	422923387	1.000000	0	419021561	0.990774	61083533269	389970339	57414802409	52918097307	0.000000	0.012374	0.011601	0.000208	151.000000	418958466	0.999849	0	0.499540	0.022471	0.004668	
PAIR	845846774	845846774	1.000000	0	839778422	0.992826	123851694643	782617643	116302535260	110189839715	0.000000	0.008864	0.008096	0.000213	151.000000	837916932	0.997783	0	0.499724	0.021793	0.002341