#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00527/HGDP00527.cram --algo AlignmentStat HGDP/HGDP00527/QCmetrics/HGDP00527.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386864364	386864364	1.000000	0	385568904	0.996651	57494538243	362003356	54272835204	52705492831	0.000000	0.005541	0.004899	0.000217	151.000000	384120436	0.996243	0	0.499975	0.019525	0.000006	
SECOND_OF_PAIR	386864364	386864364	1.000000	0	384176107	0.993051	56060609532	359798614	53010972759	48865572658	0.000000	0.012477	0.011846	0.000206	151.000000	384120436	0.999855	0	0.499546	0.020967	0.002864	
PAIR	773728728	773728728	1.000000	0	769745011	0.994851	113555147775	721801970	107283807963	101571065489	0.000000	0.008965	0.008332	0.000212	151.000000	768240872	0.998046	0	0.499761	0.020245	0.001435