#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00528/HGDP00528.cram --algo AlignmentStat HGDP/HGDP00528/QCmetrics/HGDP00528.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	457682271	457682271	1.000000	0	456532321	0.997487	68293832641	428390768	64362954405	62878623800	0.000000	0.004858	0.004230	0.000207	151.000000	454726412	0.996044	0	0.500007	0.017289	0.000008	
SECOND_OF_PAIR	457682271	457682271	1.000000	0	454770128	0.993637	66679141367	425607654	62955659936	58263946180	0.000000	0.011953	0.011301	0.000197	151.000000	454726412	0.999904	0	0.499513	0.018476	0.002146	
PAIR	915364542	915364542	1.000000	0	911302449	0.995562	134972974008	853998422	127318614341	121142569980	0.000000	0.008363	0.007726	0.000202	151.000000	909452824	0.997970	0	0.499760	0.017881	0.001077