#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00529/HGDP00529.cram --algo AlignmentStat HGDP/HGDP00529/QCmetrics/HGDP00529.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394825866	394825866	1.000000	0	394493519	0.999158	58678106737	364466601	54593220144	53255391340	0.000000	0.005359	0.004462	0.000247	151.000000	392993659	0.996198	0	0.499917	0.028659	0.000004	
SECOND_OF_PAIR	394825866	394825866	1.000000	0	393020504	0.995427	57020201177	361992035	53187498780	49368568794	0.000000	0.011837	0.010981	0.000232	151.000000	392993659	0.999932	0	0.499478	0.033856	0.000655	
PAIR	789651732	789651732	1.000000	0	787514023	0.997293	115698307914	726458636	107780718924	102623960134	0.000000	0.008551	0.007679	0.000240	151.000000	785987318	0.998061	0	0.499698	0.031253	0.000329