#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00531/HGDP00531.cram --algo AlignmentStat HGDP/HGDP00531/QCmetrics/HGDP00531.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	434938898	434938898	1.000000	0	431991031	0.993222	64467984097	403859192	60624496352	59162539058	0.000000	0.005242	0.004518	0.000222	151.000000	429902560	0.995165	0	0.499829	0.021393	0.000003	
SECOND_OF_PAIR	434938898	434938898	1.000000	0	429933712	0.988492	62599714782	400773784	58997710428	54271164954	1.000000	0.013071	0.012374	0.000208	151.000000	429902560	0.999928	0	0.499568	0.023396	0.000629	
PAIR	869877796	869877796	1.000000	0	861924743	0.990857	127067698879	804632976	119622206780	113433704012	0.000000	0.009099	0.008392	0.000215	151.000000	859805120	0.997541	0	0.499699	0.022392	0.000316