#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00534/HGDP00534.cram --algo AlignmentStat HGDP/HGDP00534/QCmetrics/HGDP00534.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	474727217	474727217	1.000000	0	474225727	0.998944	70804452819	444929941	66782137212	65096525896	0.000000	0.005145	0.004476	0.000215	151.000000	471966460	0.995236	0	0.499910	0.020362	0.000003	
SECOND_OF_PAIR	474727217	474727217	1.000000	0	471997371	0.994250	68833425630	441554744	65056119350	60042297734	0.000000	0.012136	0.011485	0.000203	151.000000	471966460	0.999935	0	0.499571	0.022259	0.000587	
PAIR	949454434	949454434	1.000000	0	946223098	0.996597	139637878449	886484685	131838256562	125138823630	0.000000	0.008591	0.007934	0.000209	151.000000	943932920	0.997580	0	0.499741	0.021308	0.000295