#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00534/HGDP00534.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00534/QCmetrics/HGDP00534.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 2.4678 18.396 0 0 0 0.042774 0.0064484 0.10246 0.040063 0.43623 0.62798 0.20364 0.048854 0.030631 0.023294 0.019271 0.016585 0.014629 0.012328 0.010944 0.0099133 0.0091365 0.008474 0.0079102 0.0074334 0.12115 1 coverage high_quality_coverage_count 0 18823007 1 2706065 2 522355 3 257964 4 172245 5 126596 6 100864 7 83072 8 65716 9 54464 10 45724 11 39445 12 33573 13 28978 14 25696 15 22687 16 20822 17 18792 18 16971 19 15824 20 14620 21 13435 22 12577 23 11730 24 11132 25 10474 26 9725 27 9217 28 8838 29 7963 30 7349 31 6712 32 6200 33 5688 34 5372 35 5317 36 4907 37 4506 38 4286 39 4069 40 3865 41 3888 42 3651 43 3526 44 3243 45 3054 46 3071 47 2788 48 2774 49 2837 50 2656 51 2701 52 2547 53 2446 54 2381 55 2362 56 2468 57 2307 58 2280 59 2219 60 2138 61 1988 62 1976 63 1948 64 1812 65 1683 66 1707 67 1731 68 1690 69 1687 70 1602 71 1599 72 1627 73 1658 74 1556 75 1593 76 1603 77 1480 78 1507 79 1435 80 1407 81 1406 82 1395 83 1368 84 1390 85 1324 86 1289 87 1273 88 1224 89 1250 90 1193 91 1116 92 1125 93 1160 94 1168 95 1125 96 1117 97 1088 98 1109 99 1069 100 1076 101 1074 102 972 103 965 104 1032 105 1029 106 965 107 975 108 932 109 987 110 927 111 963 112 991 113 989 114 973 115 966 116 957 117 953 118 917 119 949 120 973 121 925 122 951 123 978 124 916 125 946 126 961 127 957 128 1023 129 946 130 968 131 999 132 943 133 1012 134 945 135 1000 136 1036 137 941 138 949 139 974 140 1023 141 934 142 930 143 967 144 950 145 932 146 895 147 900 148 935 149 905 150 865 151 871 152 798 153 816 154 800 155 831 156 796 157 751 158 726 159 749 160 711 161 693 162 717 163 657 164 706 165 615 166 607 167 614 168 639 169 554 170 575 171 589 172 563 173 508 174 536 175 525 176 565 177 504 178 552 179 557 180 555 181 493 182 535 183 473 184 491 185 539 186 531 187 522 188 525 189 541 190 576 191 538 192 493 193 511 194 507 195 553 196 528 197 497 198 528 199 501 200 531 201 539 202 511 203 551 204 538 205 506 206 536 207 543 208 554 209 552 210 497 211 526 212 524 213 574 214 481 215 471 216 523 217 477 218 495 219 491 220 451 221 444 222 449 223 428 224 391 225 420 226 409 227 405 228 407 229 388 230 383 231 403 232 347 233 391 234 357 235 369 236 390 237 390 238 373 239 400 240 375 241 394 242 363 243 376 244 347 245 351 246 365 247 369 248 301 249 323 250 74986