#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00535/HGDP00535.cram --algo AlignmentStat HGDP/HGDP00535/QCmetrics/HGDP00535.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385543098	385543098	1.000000	0	385027485	0.998663	57457227473	361249413	54195069436	52676436434	0.000000	0.005379	0.004730	0.000215	151.000000	382938340	0.994574	0	0.500014	0.019947	0.000004	
SECOND_OF_PAIR	385543098	385543098	1.000000	0	382968752	0.993323	55736908993	358219153	52672364047	48251461956	1.000000	0.013184	0.012558	0.000202	151.000000	382938340	0.999921	0	0.499475	0.021470	0.001065	
PAIR	771086196	771086196	1.000000	0	767996237	0.995993	113194136466	719468566	106867433483	100927898390	0.000000	0.009222	0.008588	0.000208	151.000000	765876680	0.997240	0	0.499745	0.020706	0.000534