#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00536/HGDP00536.cram --algo AlignmentStat HGDP/HGDP00536/QCmetrics/HGDP00536.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	474975579	474975579	1.000000	0	474343701	0.998670	70667832947	443973509	66511619178	64631475614	0.000000	0.005559	0.004880	0.000227	151.000000	472476807	0.996064	0	0.499903	0.022749	0.000005	
SECOND_OF_PAIR	474975579	474975579	1.000000	0	472520796	0.994832	68858192400	441044915	64929121907	60095388329	0.000000	0.011864	0.011191	0.000214	151.000000	472476807	0.999907	0	0.499572	0.025873	0.001060	
PAIR	949951158	949951158	1.000000	0	946864497	0.996751	139526025347	885018424	131440741085	124726863943	0.000000	0.008670	0.007997	0.000221	151.000000	944953614	0.997982	0	0.499738	0.024308	0.000532