#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00537/HGDP00537.cram --algo AlignmentStat HGDP/HGDP00537/QCmetrics/HGDP00537.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	432640920	432640920	1.000000	0	430855534	0.995873	64281812810	403710518	60540570653	58848944576	0.000000	0.005369	0.004717	0.000217	151.000000	428438139	0.994389	0	0.499923	0.020275	0.000008	
SECOND_OF_PAIR	432640920	432640920	1.000000	0	428482973	0.990389	62292312768	400285405	58767244942	53709733463	1.000000	0.013386	0.012738	0.000205	151.000000	428438139	0.999895	0	0.499542	0.021790	0.001814	
PAIR	865281840	865281840	1.000000	0	859338507	0.993131	126574125578	803995923	119307815595	112558678039	0.000000	0.009314	0.008668	0.000211	151.000000	856876278	0.997135	0	0.499733	0.021031	0.000911