#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00538/HGDP00538.cram --algo AlignmentStat HGDP/HGDP00538/QCmetrics/HGDP00538.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386415912	386415912	1.000000	0	385135362	0.996686	57379266185	358391955	53739155031	52214637522	0.000000	0.005680	0.004836	0.000226	151.000000	383771013	0.996457	0	0.499931	0.022532	0.000009	
SECOND_OF_PAIR	386415912	386415912	1.000000	0	383825217	0.993296	55968268713	356305834	52535388798	48622489485	0.000000	0.012143	0.011333	0.000214	151.000000	383771013	0.999859	0	0.499542	0.023787	0.002917	
PAIR	772831824	772831824	1.000000	0	768960579	0.994991	113347534898	714697789	106274543829	100837127007	0.000000	0.008871	0.008047	0.000220	151.000000	767542026	0.998155	0	0.499737	0.023158	0.001463