#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00538/HGDP00538.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00538/QCmetrics/HGDP00538.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 15.602 5.2246 15 3 0 0.13125 0.0017828 0.044864 0.0038493 8.9113e-05 0.18184 0.99814 0.99036 0.91884 0.57929 0.17984 0.031457 0.0074157 0.0024345 0.0011301 0.00062212 0.00039516 0.00027141 0.00019279 0.00013918 0.99072 20 coverage high_quality_coverage_count 0 283678 1 236546 2 242099 3 294728 4 409308 5 639133 6 1065239 7 1795221 8 2912161 9 4467724 10 6397625 11 8556525 12 10666123 13 12432323 14 13597571 15 14038280 16 13671341 17 12636106 18 11110241 19 9306184 20 7452760 21 5722001 22 4248221 23 3040415 24 2107797 25 1424768 26 943828 27 620050 28 403338 29 264971 30 181060 31 128508 32 96460 33 76337 34 62780 35 53983 36 46732 37 41558 38 37193 39 33102 40 29546 41 26743 42 24567 43 22094 44 19702 45 18040 46 16423 47 15075 48 13633 49 12598 50 11709 51 10399 52 9519 53 8588 54 7605 55 6936 56 6362 57 5874 58 5354 59 4923 60 4770 61 4318 62 4242 63 3859 64 3495 65 3143 66 2996 67 2802 68 2433 69 2465 70 2248 71 2156 72 2121 73 1919 74 1859 75 1748 76 1767 77 1745 78 1683 79 1578 80 1483 81 1394 82 1321 83 1268 84 1223 85 1158 86 1099 87 998 88 1061 89 955 90 945 91 852 92 900 93 894 94 882 95 823 96 775 97 737 98 689 99 658 100 640 101 609 102 592 103 521 104 535 105 502 106 490 107 463 108 418 109 421 110 394 111 363 112 353 113 357 114 355 115 347 116 304 117 319 118 289 119 307 120 297 121 296 122 253 123 251 124 243 125 267 126 203 127 241 128 223 129 229 130 209 131 224 132 219 133 195 134 203 135 201 136 185 137 184 138 182 139 172 140 173 141 158 142 143 143 132 144 118 145 107 146 117 147 129 148 93 149 87 150 132 151 103 152 83 153 98 154 92 155 89 156 104 157 95 158 83 159 94 160 100 161 114 162 104 163 88 164 93 165 87 166 79 167 78 168 82 169 75 170 72 171 68 172 80 173 49 174 65 175 58 176 64 177 58 178 67 179 57 180 54 181 47 182 55 183 56 184 68 185 68 186 68 187 51 188 43 189 43 190 61 191 42 192 56 193 51 194 46 195 38 196 47 197 58 198 26 199 30 200 38 201 37 202 36 203 33 204 39 205 38 206 36 207 39 208 37 209 38 210 34 211 32 212 36 213 38 214 35 215 34 216 40 217 37 218 40 219 42 220 29 221 40 222 41 223 30 224 36 225 32 226 28 227 19 228 21 229 28 230 20 231 19 232 19 233 18 234 18 235 15 236 11 237 12 238 13 239 21 240 22 241 20 242 16 243 21 244 26 245 11 246 18 247 21 248 19 249 23 250 1933