#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00539/HGDP00539.cram --algo AlignmentStat HGDP/HGDP00539/QCmetrics/HGDP00539.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	446069537	446069537	1.000000	0	444020032	0.995405	66356548890	417870105	62761835165	61303707615	0.000000	0.004889	0.004251	0.000217	151.000000	442384229	0.996316	0	0.500033	0.018890	0.000019	
SECOND_OF_PAIR	446069537	446069537	1.000000	0	442453365	0.991893	64822223093	415314282	61420344180	57164005912	0.000000	0.011354	0.010722	0.000206	151.000000	442384229	0.999844	0	0.499515	0.020381	0.004154	
PAIR	892139074	892139074	1.000000	0	886473397	0.993649	131178771983	833184387	124182179345	118467713527	0.000000	0.008083	0.007451	0.000212	151.000000	884768458	0.998077	0	0.499775	0.019634	0.002086