#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00539/HGDP00539.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00539/QCmetrics/HGDP00539.WgsMetrics.chrX.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
152114341	33.987	8.5862	34	4	0	0.15279	0.0017254	0.039168	0.0047938	0.00072979	0.1992	0.99922	0.99734	0.99438	0.98945	0.97675	0.92257	0.75018	0.19531	0.016042	0.0041035	0.0026599	0.0019034	0.0013988	0.0010641	0.99838	28	

coverage	high_quality_coverage_count	
0	119111
1	74510
2	68894
3	69201
4	72213
5	77542
6	81789
7	87707
8	96598
9	107087
10	117284
11	129856
12	145303
13	165780
14	192225
15	226725
16	278780
17	351897
18	459134
19	614653
20	832588
21	1132661
22	1532627
23	2051593
24	2692047
25	3439007
26	4298270
27	5226819
28	6166006
29	7092760
30	7919755
31	8602037
32	9097264
33	9354966
34	9380021
35	9165532
36	8744555
37	8142110
38	7411681
39	6586899
40	5729873
41	4881931
42	4072734
43	3328211
44	2668363
45	2099575
46	1629380
47	1240251
48	930179
49	688201
50	504168
51	368451
52	267754
53	194580
54	142091
55	105643
56	79816
57	62335
58	50030
59	41082
60	34448
61	29751
62	26460
63	23290
64	21143
65	19301
66	18100
67	16665
68	15738
69	14704
70	14042
71	13427
72	13006
73	12257
74	11474
75	11011
76	10508
77	10200
78	9665
79	9476
80	8868
81	8620
82	8433
83	8036
84	7767
85	7621
86	7172
87	7048
88	6669
89	6521
90	6399
91	5808
92	5556
93	5327
94	5056
95	4952
96	4838
97	4566
98	4288
99	4136
100	4002
101	3870
102	3642
103	3464
104	3299
105	3270
106	3017
107	2875
108	2723
109	2606
110	2557
111	2481
112	2455
113	2295
114	2364
115	2165
116	2140
117	2113
118	1920
119	1821
120	1805
121	1767
122	1612
123	1604
124	1541
125	1516
126	1563
127	1466
128	1499
129	1452
130	1430
131	1287
132	1298
133	1204
134	1132
135	1166
136	1162
137	1089
138	1054
139	1045
140	1023
141	936
142	964
143	930
144	868
145	899
146	884
147	831
148	888
149	831
150	826
151	872
152	865
153	842
154	804
155	793
156	735
157	740
158	749
159	695
160	768
161	729
162	696
163	741
164	712
165	708
166	688
167	611
168	662
169	597
170	599
171	640
172	597
173	593
174	572
175	559
176	562
177	530
178	545
179	511
180	552
181	517
182	491
183	466
184	504
185	445
186	444
187	410
188	480
189	454
190	427
191	410
192	406
193	412
194	430
195	401
196	371
197	373
198	355
199	370
200	349
201	346
202	374
203	340
204	397
205	322
206	333
207	357
208	348
209	338
210	297
211	302
212	322
213	292
214	320
215	324
216	297
217	285
218	305
219	286
220	292
221	263
222	272
223	272
224	248
225	236
226	255
227	247
228	233
229	226
230	247
231	224
232	236
233	255
234	222
235	251
236	283
237	223
238	247
239	233
240	248
241	271
242	226
243	195
244	214
245	219
246	199
247	201
248	217
249	197
250	27089