#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00540/HGDP00540.cram --algo AlignmentStat HGDP/HGDP00540/QCmetrics/HGDP00540.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	399236162	399236162	1.000000	0	398876866	0.999100	59646935029	373264899	55987149017	54308817768	0.000000	0.004766	0.004118	0.000226	151.000000	398380244	0.998755	0	0.499584	0.018001	0.000710	
SECOND_OF_PAIR	399236162	399236162	1.000000	0	398415880	0.997945	58955746073	372505893	55331964207	52392780377	0.000000	0.008276	0.007640	0.000223	151.000000	398380244	0.999911	0	0.499393	0.018656	0.000670	
PAIR	798472324	798472324	1.000000	0	797292746	0.998523	118602681102	745770792	111319113224	106701598145	0.000000	0.006510	0.005868	0.000224	151.000000	796760488	0.999332	0	0.499489	0.018328	0.000690