#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00541/HGDP00541.cram --algo AlignmentStat HGDP/HGDP00541/QCmetrics/HGDP00541.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	350661869	350661869	1.000000	0	350148245	0.998535	52254370932	326326035	48883124645	46663492447	0.000000	0.006262	0.005596	0.000212	151.000000	342851813	0.979162	0	0.498587	0.020034	0.000975	
SECOND_OF_PAIR	350661869	350661869	1.000000	0	342892994	0.977845	50470001290	319059218	47234364734	43906232678	0.000000	0.009091	0.008424	0.000210	151.000000	342851813	0.999880	0	0.498828	0.020519	0.000895	
PAIR	701323738	701323738	1.000000	0	693041239	0.988190	102724372222	645385253	96117489379	90569725125	0.000000	0.007652	0.006986	0.000211	151.000000	685703626	0.989412	0	0.498706	0.020274	0.000935