#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00542/HGDP00542.cram --algo AlignmentStat HGDP/HGDP00542/QCmetrics/HGDP00542.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	787089737	787089737	1.000000	0	786359165	0.999072	117462051184	733279779	110019850972	106389988078	0.000000	0.005451	0.004744	0.000223	151.000000	778042463	0.989424	0	0.499482	0.020682	0.000283	
SECOND_OF_PAIR	787089737	787089737	1.000000	0	778109275	0.988590	114387533357	724099285	107253935590	100300316693	0.000000	0.009637	0.008917	0.000215	151.000000	778042463	0.999914	0	0.499259	0.021549	0.000625	
PAIR	1574179474	1574179474	1.000000	0	1564468440	0.993831	231849584541	1457379064	217273786562	206690304771	0.000000	0.007516	0.006804	0.000219	151.000000	1556084926	0.994641	0	0.499371	0.021114	0.000454