#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00543/HGDP00543.cram --algo AlignmentStat HGDP/HGDP00543/QCmetrics/HGDP00543.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	357344458	357344458	1.000000	0	357018629	0.999088	53345279128	333694622	50023459257	47928435479	0.000000	0.006039	0.005445	0.000208	151.000000	352978216	0.988683	0	0.498885	0.018061	0.000378	
SECOND_OF_PAIR	357344458	357344458	1.000000	0	353007586	0.987864	52179093693	329526251	48936323330	45790720447	0.000000	0.008762	0.008166	0.000203	151.000000	352978216	0.999917	0	0.498996	0.018417	0.000349	
PAIR	714688916	714688916	1.000000	0	710026215	0.993476	105524372821	663220873	98959782587	93719155926	0.000000	0.007386	0.006790	0.000205	151.000000	705956432	0.994268	0	0.498940	0.018238	0.000364