#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00544/HGDP00544.cram --algo AlignmentStat HGDP/HGDP00544/QCmetrics/HGDP00544.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356834527	356834527	1.000000	0	356610243	0.999371	53273226564	334792551	50171419399	48071010892	0.000000	0.005917	0.005368	0.000208	151.000000	352110679	0.987382	0	0.498815	0.018181	0.000064	
SECOND_OF_PAIR	356834527	356834527	1.000000	0	352129300	0.986814	51981373988	330096633	48955644517	45882561830	0.000000	0.008259	0.007699	0.000203	151.000000	352110679	0.999947	0	0.498796	0.018631	0.000059	
PAIR	713669054	713669054	1.000000	0	708739543	0.993093	105254600552	664889184	99127063916	93953572722	0.000000	0.007074	0.006519	0.000205	151.000000	704221358	0.993625	0	0.498806	0.018405	0.000061