#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00545/HGDP00545.cram --algo AlignmentStat HGDP/HGDP00545/QCmetrics/HGDP00545.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	354376973	354376973	1.000000	0	354146883	0.999351	52919199910	330139880	49500845659	47337932149	0.000000	0.006115	0.005465	0.000209	151.000000	344403112	0.972487	0	0.498487	0.019836	0.000092	
SECOND_OF_PAIR	354376973	354376973	1.000000	0	344422387	0.971910	50572978692	320456617	47338828700	44087008306	0.000000	0.009426	0.008773	0.000206	151.000000	344403112	0.999944	0	0.498977	0.020426	0.000082	
PAIR	708753946	708753946	1.000000	0	698569270	0.985630	103492178602	650596497	96839674359	91424940455	0.000000	0.007733	0.007082	0.000207	151.000000	688806224	0.986024	0	0.498729	0.020127	0.000087