#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00546/HGDP00546.cram --algo AlignmentStat HGDP/HGDP00546/QCmetrics/HGDP00546.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	801536693	801536693	1.000000	0	800823526	0.999110	119674419913	746009827	111922928661	108283782919	0.000000	0.005364	0.004703	0.000215	151.000000	789746811	0.986168	0	0.499357	0.020423	0.000097	
SECOND_OF_PAIR	801536693	801536693	1.000000	0	789809922	0.985370	116055421517	734021836	108651851538	101691390338	0.000000	0.009625	0.008930	0.000210	151.000000	789746811	0.999920	0	0.498979	0.021452	0.000578	
PAIR	1603073386	1603073386	1.000000	0	1590633448	0.992240	235729841430	1480031663	220574780199	209975173257	0.000000	0.007462	0.006785	0.000212	151.000000	1579493622	0.992997	0	0.499170	0.020934	0.000337