#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00547/HGDP00547.cram --algo AlignmentStat HGDP/HGDP00547/QCmetrics/HGDP00547.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359456094	359456094	1.000000	0	359200781	0.999290	53620650315	335510830	50246502574	48076812239	0.000000	0.005960	0.005344	0.000209	151.000000	358572014	0.998250	0	0.498921	0.018339	0.000288	
SECOND_OF_PAIR	359456094	359456094	1.000000	0	358597833	0.997612	53123273459	334744182	49779082681	46644597988	0.000000	0.007757	0.007146	0.000204	151.000000	358572014	0.999928	0	0.499070	0.018630	0.000270	
PAIR	718912188	718912188	1.000000	0	717798614	0.998451	106743923774	670255012	100025585255	94721410227	0.000000	0.006854	0.006241	0.000207	151.000000	717144028	0.999088	0	0.498996	0.018485	0.000279