#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00549/HGDP00549.cram --algo AlignmentStat HGDP/HGDP00549/QCmetrics/HGDP00549.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	789314092	789314092	1.000000	0	788301106	0.998717	117695063243	736342253	110375636683	106966515232	0.000000	0.005297	0.004613	0.000223	151.000000	777452963	0.986239	0	0.499621	0.020209	0.000347	
SECOND_OF_PAIR	789314092	789314092	1.000000	0	777533697	0.985075	114047616121	724657298	107049006351	100262063390	0.000000	0.009630	0.008923	0.000217	151.000000	777452963	0.999896	0	0.499257	0.021143	0.000856	
PAIR	1578628184	1578628184	1.000000	0	1565834803	0.991896	231742679364	1460999551	217424643034	207228578622	0.000000	0.007429	0.006735	0.000220	151.000000	1554905926	0.993020	0	0.499440	0.020673	0.000602