#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00550/HGDP00550.cram --algo AlignmentStat HGDP/HGDP00550/QCmetrics/HGDP00550.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355430682	355430682	1.000000	0	354730948	0.998031	52755510479	331476829	49470691570	46988174940	0.000000	0.006150	0.005603	0.000204	151.000000	348579691	0.982659	0	0.497723	0.019894	0.000715	
SECOND_OF_PAIR	355430682	355430682	1.000000	0	348614176	0.980822	50728164049	324985110	47549546160	42319264490	1.000000	0.026524	0.026002	0.000199	151.000000	348579691	0.999901	0	0.497519	0.020642	0.000660	
PAIR	710861364	710861364	1.000000	0	703345124	0.989427	103483674528	656461939	97020237730	89307439430	0.000000	0.016136	0.015600	0.000202	151.000000	697159382	0.991205	0	0.497622	0.020265	0.000688