#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00556/HGDP00556.cram --algo AlignmentStat HGDP/HGDP00556/QCmetrics/HGDP00556.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	747030099	747030099	1.000000	0	746024440	0.998654	111309074475	697489035	104473624988	100962871501	0.000000	0.005149	0.004512	0.000211	151.000000	732831329	0.982315	0	0.498999	0.019595	0.000098	
SECOND_OF_PAIR	747030099	747030099	1.000000	0	732882226	0.981061	105338599782	683198266	98918071862	92292747011	0.000000	0.010396	0.009722	0.000207	151.000000	732831329	0.999931	0	0.498614	0.020675	0.000529	
PAIR	1494060198	1494060198	1.000000	0	1478906666	0.989857	216647674257	1380687301	203391696850	193255618512	0.000000	0.007700	0.007046	0.000209	151.000000	1465662658	0.991045	0	0.498808	0.020131	0.000313