#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00562/HGDP00562.cram --algo AlignmentStat HGDP/HGDP00562/QCmetrics/HGDP00562.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	331517290	331517290	1.000000	0	331440759	0.999769	49595836131	309582952	46475282114	44704871944	0.000000	0.004664	0.004007	0.000211	151.000000	331204072	0.999286	0	0.499253	0.018895	0.000080	
SECOND_OF_PAIR	331517290	331517290	1.000000	0	331221554	0.999108	49310341436	309072246	46193521394	43613101978	0.000000	0.006759	0.006106	0.000206	151.000000	331204072	0.999947	0	0.499143	0.019816	0.000075	
PAIR	663034580	663034580	1.000000	0	662662313	0.999439	98906177567	618655198	92668803508	88317973922	0.000000	0.005708	0.005053	0.000209	151.000000	662408144	0.999616	0	0.499198	0.019355	0.000078