#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00563/HGDP00563.cram --algo AlignmentStat HGDP/HGDP00563/QCmetrics/HGDP00563.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	476364357	476364357	1.000000	0	476196527	0.999648	70995744528	447858718	67092947837	65016403007	0.000000	0.005694	0.005039	0.000223	151.000000	473946030	0.995274	0	0.500013	0.020209	0.000001	
SECOND_OF_PAIR	476364357	476364357	1.000000	0	473973165	0.994980	68953952956	444511495	65274356386	59964517771	1.000000	0.012688	0.012045	0.000211	151.000000	473946030	0.999943	0	0.499451	0.022094	0.000187	
PAIR	952728714	952728714	1.000000	0	950169692	0.997314	139949697484	892370213	132367304223	124980920778	0.000000	0.009140	0.008493	0.000217	151.000000	947892060	0.997603	0	0.499733	0.021150	0.000094