#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00563/HGDP00563.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00563/QCmetrics/HGDP00563.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 2.4976 19.309 0 0 0 0.027348 0.0068705 0.09956 0.034751 0.46255 0.63108 0.15073 0.048025 0.02965 0.02238 0.018598 0.016254 0.014613 0.012525 0.011191 0.010255 0.0094901 0.0088789 0.0083233 0.0078323 0.097968 0 coverage high_quality_coverage_count 0 20073706 1 1630781 2 391342 3 235671 4 169727 5 128329 6 101908 7 82915 8 67037 9 54126 10 45699 11 38753 12 33100 13 28963 14 25320 15 22075 16 19329 17 17537 18 15892 19 14557 20 13341 21 12187 22 11050 23 9807 24 9022 25 8594 26 8230 27 7879 28 7299 29 6783 30 6311 31 5961 32 5563 33 5274 34 4870 35 4625 36 4451 37 4187 38 4090 39 4019 40 3887 41 3668 42 3505 43 3311 44 3149 45 3010 46 2898 47 2777 48 2691 49 2626 50 2426 51 2411 52 2336 53 2182 54 2112 55 2107 56 2172 57 2159 58 2136 59 2098 60 1938 61 2029 62 2014 63 1888 64 1889 65 1714 66 1710 67 1672 68 1579 69 1639 70 1499 71 1503 72 1514 73 1510 74 1491 75 1407 76 1351 77 1402 78 1370 79 1399 80 1411 81 1364 82 1279 83 1287 84 1324 85 1305 86 1247 87 1313 88 1304 89 1299 90 1237 91 1208 92 1220 93 1201 94 1152 95 1121 96 1132 97 1111 98 1117 99 1107 100 1097 101 1054 102 973 103 973 104 979 105 1002 106 974 107 969 108 961 109 956 110 946 111 1000 112 903 113 889 114 955 115 930 116 874 117 897 118 866 119 936 120 894 121 855 122 882 123 930 124 859 125 866 126 808 127 784 128 802 129 789 130 800 131 756 132 757 133 759 134 713 135 735 136 744 137 781 138 751 139 722 140 795 141 760 142 763 143 759 144 750 145 704 146 748 147 702 148 692 149 714 150 742 151 773 152 749 153 712 154 750 155 780 156 760 157 734 158 762 159 777 160 760 161 792 162 762 163 725 164 782 165 734 166 732 167 715 168 734 169 755 170 714 171 701 172 704 173 714 174 667 175 598 176 589 177 604 178 541 179 603 180 562 181 552 182 532 183 551 184 539 185 519 186 543 187 491 188 456 189 463 190 495 191 455 192 511 193 469 194 509 195 495 196 444 197 462 198 456 199 458 200 446 201 461 202 437 203 430 204 408 205 451 206 453 207 458 208 441 209 394 210 403 211 421 212 421 213 433 214 442 215 441 216 389 217 387 218 432 219 401 220 401 221 394 222 364 223 365 224 364 225 374 226 353 227 380 228 361 229 379 230 403 231 373 232 363 233 368 234 340 235 381 236 378 237 382 238 394 239 372 240 325 241 381 242 382 243 415 244 366 245 399 246 384 247 406 248 418 249 365 250 91313