#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00564/HGDP00564.cram --algo AlignmentStat HGDP/HGDP00564/QCmetrics/HGDP00564.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384027315	384027315	1.000000	0	383858996	0.999562	57420682948	362414177	54409498425	52864700503	0.000000	0.005541	0.005015	0.000206	151.000000	382555103	0.996603	0	0.499984	0.016548	0.000001	
SECOND_OF_PAIR	384027315	384027315	1.000000	0	382578383	0.996227	56048930383	360293095	53188890505	49306657510	0.000000	0.011800	0.011236	0.000197	151.000000	382555103	0.999939	0	0.499520	0.018223	0.000245	
PAIR	768054630	768054630	1.000000	0	766437379	0.997894	113469613331	722707272	107598388930	102171358013	0.000000	0.008632	0.008090	0.000202	151.000000	765110206	0.998268	0	0.499752	0.017384	0.000123