#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00564/HGDP00564.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00564/QCmetrics/HGDP00564.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 33.458 10.793 33 5 0 0.065596 0.0016133 0.048197 0.0032935 0.012327 0.13103 0.99857 0.99577 0.99238 0.98666 0.96873 0.89596 0.70108 0.17771 0.019266 0.0070674 0.0049498 0.0037537 0.0029974 0.0024675 0.99738 26 coverage high_quality_coverage_count 0 3935665 1 2293669 2 1897375 3 1763515 4 1727733 5 1729289 6 1758991 7 1825994 8 1924214 9 2080213 10 2286241 11 2590245 12 2996236 13 3546756 14 4306198 15 5369037 16 6866926 17 8980378 18 11965122 19 16096284 20 21657083 21 28923560 22 38066623 23 49172111 24 62125604 25 76570803 26 92021546 27 107694917 28 122804660 29 136451166 30 147787428 31 156091016 32 160865359 33 161815781 34 159057313 35 152845802 36 143594407 37 132108533 38 118999045 39 105032337 40 90934539 41 77223287 42 64392390 43 52744834 44 42521489 45 33738137 46 26363180 47 20329887 48 15480308 49 11671059 50 8728612 51 6503161 52 4841833 53 3621811 54 2736421 55 2096124 56 1642185 57 1319841 58 1095427 59 934646 60 817242 61 731698 62 666687 63 615773 64 573114 65 538493 66 508106 67 480450 68 455498 69 432215 70 410479 71 390190 72 368315 73 350308 74 331861 75 316679 76 299727 77 287561 78 271767 79 259863 80 248345 81 237391 82 226828 83 217235 84 208785 85 200779 86 194032 87 188000 88 181393 89 175471 90 169116 91 163850 92 157478 93 152295 94 147049 95 141545 96 137934 97 133090 98 128684 99 125235 100 120624 101 117003 102 113012 103 109730 104 105638 105 101199 106 98821 107 95381 108 91756 109 89114 110 86034 111 83024 112 80108 113 77996 114 75564 115 72817 116 71279 117 69279 118 66633 119 65071 120 63181 121 62087 122 60301 123 59217 124 57775 125 56623 126 55118 127 54491 128 52889 129 51268 130 50793 131 49824 132 48797 133 47552 134 46754 135 45735 136 45076 137 44259 138 43457 139 42498 140 41589 141 41019 142 40392 143 39226 144 38832 145 38488 146 37632 147 37217 148 35814 149 35670 150 35359 151 34728 152 34114 153 33969 154 33477 155 32702 156 32389 157 31833 158 31410 159 30896 160 30649 161 30195 162 29324 163 29256 164 28923 165 27943 166 28085 167 27572 168 26900 169 27026 170 26181 171 26162 172 25978 173 25475 174 25016 175 24827 176 24548 177 24148 178 23826 179 23297 180 23342 181 23116 182 22709 183 22218 184 22150 185 21863 186 21382 187 21098 188 20635 189 20098 190 19915 191 19505 192 19384 193 19088 194 18699 195 18156 196 18269 197 17783 198 17709 199 17318 200 17121 201 16824 202 16516 203 16612 204 16064 205 15734 206 15494 207 15301 208 14984 209 14551 210 14438 211 14350 212 14069 213 13896 214 14052 215 13654 216 13415 217 13377 218 12997 219 13004 220 12668 221 12574 222 12282 223 12204 224 12122 225 12129 226 11959 227 11805 228 11691 229 11545 230 11276 231 11243 232 11150 233 11139 234 10640 235 10646 236 10658 237 10426 238 10395 239 10503 240 10172 241 10042 242 9693 243 9852 244 9549 245 9554 246 9427 247 9115 248 9168 249 8992 250 1675103