#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00565/HGDP00565.cram --algo AlignmentStat HGDP/HGDP00565/QCmetrics/HGDP00565.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391480807	391480807	1.000000	0	390951607	0.998648	58337696365	365277819	54852424771	53452169733	0.000000	0.005399	0.004602	0.000232	151.000000	389628562	0.996616	0	0.499948	0.023095	0.000003	
SECOND_OF_PAIR	391480807	391480807	1.000000	0	389658604	0.995345	56882585632	363159807	53607894564	49546132266	0.000000	0.012307	0.011543	0.000215	151.000000	389628562	0.999923	0	0.499565	0.024391	0.001086	
PAIR	782961614	782961614	1.000000	0	780610211	0.996997	115220281997	728437626	108460319335	102998301999	0.000000	0.008809	0.008033	0.000224	151.000000	779257124	0.998267	0	0.499757	0.023742	0.000545