#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00565/HGDP00565.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00565/QCmetrics/HGDP00565.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 30.421 8.0449 30 4 0 0.11249 0.0015861 0.044217 0.0020292 0.00049073 0.16081 0.99918 0.9972 0.99381 0.98638 0.95451 0.82412 0.5453 0.078679 0.0073187 0.0030225 0.001919 0.0013628 0.0010258 0.00080213 0.99828 28 coverage high_quality_coverage_count 0 124359 1 77456 2 70009 3 74111 4 79593 5 84149 6 92651 7 100246 8 112417 9 127283 10 147905 11 173613 12 209158 13 259756 14 338656 15 455330 16 627211 17 874372 18 1215812 19 1675216 20 2267584 21 3000963 22 3863674 23 4835139 24 5867600 25 6896244 26 7858527 27 8671592 28 9300722 29 9685461 30 9792359 31 9632847 32 9227310 33 8610030 34 7832635 35 6961321 36 6045991 37 5133938 38 4269725 39 3473235 40 2768262 41 2166521 42 1664370 43 1262639 44 942743 45 697836 46 509975 47 372886 48 270563 49 199065 50 148439 51 112514 52 87028 53 68755 54 56086 55 46958 56 40524 57 34884 58 30855 59 27475 60 24791 61 21932 62 19960 63 18136 64 16889 65 15235 66 14053 67 13023 68 12280 69 11557 70 10867 71 10007 72 9776 73 9220 74 8542 75 8236 76 7690 77 6926 78 6765 79 6575 80 6279 81 5870 82 5749 83 5385 84 5107 85 4948 86 4715 87 4638 88 4400 89 4169 90 3902 91 3748 92 3720 93 3634 94 3396 95 3360 96 3294 97 3070 98 2987 99 2917 100 2755 101 2633 102 2568 103 2382 104 2370 105 2353 106 2130 107 2089 108 1872 109 1785 110 1791 111 1808 112 1639 113 1670 114 1675 115 1527 116 1507 117 1423 118 1424 119 1377 120 1397 121 1356 122 1317 123 1342 124 1337 125 1217 126 1162 127 1208 128 1077 129 1094 130 1034 131 1017 132 1069 133 997 134 980 135 952 136 891 137 855 138 828 139 807 140 802 141 776 142 785 143 758 144 769 145 718 146 680 147 677 148 669 149 665 150 665 151 678 152 688 153 601 154 664 155 612 156 626 157 579 158 593 159 558 160 611 161 582 162 527 163 553 164 502 165 529 166 464 167 458 168 466 169 484 170 433 171 460 172 447 173 426 174 426 175 423 176 442 177 432 178 421 179 408 180 406 181 396 182 403 183 381 184 396 185 370 186 347 187 379 188 382 189 382 190 329 191 338 192 332 193 364 194 324 195 339 196 316 197 289 198 298 199 291 200 294 201 274 202 281 203 279 204 275 205 239 206 243 207 222 208 236 209 237 210 254 211 248 212 246 213 247 214 250 215 229 216 255 217 222 218 236 219 247 220 245 221 247 222 229 223 211 224 242 225 210 226 216 227 201 228 209 229 192 230 197 231 186 232 197 233 184 234 201 235 201 236 205 237 196 238 190 239 163 240 168 241 182 242 155 243 153 244 164 245 137 246 155 247 143 248 136 249 158 250 20494