#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00566/HGDP00566.cram --algo AlignmentStat HGDP/HGDP00566/QCmetrics/HGDP00566.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	437690246	437690246	1.000000	0	437365867	0.999259	65390291152	410563385	61662524186	59996183462	0.000000	0.005464	0.004838	0.000214	151.000000	436039247	0.996967	0	0.500041	0.018948	0.000002	
SECOND_OF_PAIR	437690246	437690246	1.000000	0	436066971	0.996291	63820944919	408350512	60291643334	55575470313	1.000000	0.012362	0.011726	0.000204	151.000000	436039247	0.999936	0	0.499526	0.020479	0.000556	
PAIR	875380492	875380492	1.000000	0	873432838	0.997775	129211236071	818913897	121954167520	115571653775	0.000000	0.008871	0.008243	0.000209	151.000000	872078494	0.998449	0	0.499784	0.019713	0.000279