#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00567/HGDP00567.cram --algo AlignmentStat HGDP/HGDP00567/QCmetrics/HGDP00567.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	434905866	434905866	1.000000	0	434695238	0.999516	64992556618	408885515	61401260683	59816940593	0.000000	0.004994	0.004366	0.000220	151.000000	433354920	0.996917	0	0.499984	0.019005	0.000001	
SECOND_OF_PAIR	434905866	434905866	1.000000	0	433382186	0.996497	63505441659	406627318	60092584365	55770321762	0.000000	0.011242	0.010585	0.000210	151.000000	433354920	0.999937	0	0.499516	0.021132	0.000293	
PAIR	869811732	869811732	1.000000	0	868077424	0.998006	128497998277	815512833	121493845048	115587262355	0.000000	0.008082	0.007442	0.000215	151.000000	866709840	0.998425	0	0.499750	0.020067	0.000147