#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00568/HGDP00568.cram --algo AlignmentStat HGDP/HGDP00568/QCmetrics/HGDP00568.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366224614	366224614	1.000000	0	366078345	0.999601	54716336992	343874968	51630777199	50272124168	0.000000	0.005112	0.004452	0.000218	151.000000	364697185	0.996227	0	0.500117	0.019571	0.000001	
SECOND_OF_PAIR	366224614	366224614	1.000000	0	364720405	0.995893	53459614894	341556873	50512965709	46848994033	0.000000	0.011701	0.011012	0.000208	151.000000	364697185	0.999936	0	0.499042	0.021375	0.000185	
PAIR	732449228	732449228	1.000000	0	730798750	0.997747	108175951886	685431841	102143742908	97121118201	0.000000	0.008368	0.007696	0.000213	151.000000	729394370	0.998078	0	0.499581	0.020471	0.000093