#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00571/HGDP00571.cram --algo AlignmentStat HGDP/HGDP00571/QCmetrics/HGDP00571.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392629538	392629538	1.000000	0	392394905	0.999402	58592940996	366611269	55043225350	53634672888	0.000000	0.005079	0.004327	0.000230	151.000000	390368799	0.994837	0	0.500000	0.022138	0.000002	
SECOND_OF_PAIR	392629538	392629538	1.000000	0	390392863	0.994303	56913014380	363754177	53590881514	49572950681	0.000000	0.011797	0.011052	0.000217	151.000000	390368799	0.999938	0	0.499444	0.023958	0.000392	
PAIR	785259076	785259076	1.000000	0	782787768	0.996853	115505955376	730365446	108634106864	103207623569	0.000000	0.008389	0.007645	0.000223	151.000000	780737598	0.997381	0	0.499723	0.023046	0.000197