#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00573/HGDP00573.cram --algo AlignmentStat HGDP/HGDP00573/QCmetrics/HGDP00573.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425038393	425038393	1.000000	0	424902569	0.999680	63338347765	397981163	59615960591	57716444609	0.000000	0.005822	0.005157	0.000221	151.000000	422673471	0.994754	0	0.500000	0.020107	0.000001	
SECOND_OF_PAIR	425038393	425038393	1.000000	0	422697694	0.994493	61321057511	394719762	57835213384	52820120005	1.000000	0.013459	0.012808	0.000210	151.000000	422673471	0.999943	0	0.499440	0.021741	0.000146	
PAIR	850076786	850076786	1.000000	0	847600263	0.997087	124659405276	792700925	117451173975	110536564614	0.000000	0.009579	0.008924	0.000216	151.000000	845346942	0.997342	0	0.499720	0.020922	0.000074