#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00574/HGDP00574.cram --algo AlignmentStat HGDP/HGDP00574/QCmetrics/HGDP00574.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	451462951	451462951	1.000000	0	451141571	0.999288	67391181337	423255653	63538773455	61754337077	0.000000	0.005709	0.005011	0.000220	151.000000	449309940	0.995940	0	0.499966	0.020191	0.000002	
SECOND_OF_PAIR	451462951	451462951	1.000000	0	449339013	0.995295	65660449158	420458876	62024137903	57460474469	0.000000	0.012078	0.011375	0.000208	151.000000	449309940	0.999935	0	0.499506	0.021914	0.000513	
PAIR	902925902	902925902	1.000000	0	900480584	0.997292	133051630495	843714529	125562911358	119214811546	0.000000	0.008852	0.008154	0.000214	151.000000	898619880	0.997934	0	0.499737	0.021051	0.000258