#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00575/HGDP00575.cram --algo AlignmentStat HGDP/HGDP00575/QCmetrics/HGDP00575.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425322306	425322306	1.000000	0	425146387	0.999586	63532778212	398613518	59867525727	58376792084	0.000000	0.005154	0.004464	0.000222	151.000000	423871626	0.997002	0	0.500087	0.020045	0.000001	
SECOND_OF_PAIR	425322306	425322306	1.000000	0	423896820	0.996648	62115253196	396533339	58651129810	54564477716	0.000000	0.011312	0.010615	0.000208	151.000000	423871626	0.999941	0	0.499480	0.021784	0.000206	
PAIR	850644612	850644612	1.000000	0	849043207	0.998117	125648031408	795146857	118518655537	112941269800	0.000000	0.008198	0.007508	0.000215	151.000000	847743252	0.998469	0	0.499784	0.020913	0.000104