#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00577/HGDP00577.cram --algo AlignmentStat HGDP/HGDP00577/QCmetrics/HGDP00577.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433394311	433394311	1.000000	0	433071284	0.999255	64776908691	408369830	61343666294	59705011297	0.000000	0.005251	0.004656	0.000210	151.000000	431748860	0.996946	0	0.500000	0.017100	0.000002	
SECOND_OF_PAIR	433394311	433394311	1.000000	0	431775855	0.996266	63280275858	406194823	60024956125	55279169792	1.000000	0.012215	0.011614	0.000198	151.000000	431748860	0.999937	0	0.499527	0.018425	0.000558	
PAIR	866788622	866788622	1.000000	0	864847139	0.997760	128057184549	814564653	121368622419	114984181089	0.000000	0.008692	0.008097	0.000204	151.000000	863497720	0.998440	0	0.499763	0.017762	0.000280