#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00580/HGDP00580.cram --algo AlignmentStat HGDP/HGDP00580/QCmetrics/HGDP00580.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	365940769	365940769	1.000000	0	365629009	0.999148	54425315085	341741397	51055976610	49151779393	0.000000	0.004910	0.004230	0.000213	151.000000	362077079	0.990285	0	0.498497	0.018942	0.000079	
SECOND_OF_PAIR	365940769	365940769	1.000000	0	362097225	0.989497	53739112099	338247887	50413368438	47376771198	0.000000	0.007710	0.007036	0.000208	151.000000	362077079	0.999944	0	0.498682	0.019887	0.000074	
PAIR	731881538	731881538	1.000000	0	727726234	0.994322	108164427184	679989284	101469345048	96528550591	0.000000	0.006301	0.005624	0.000210	151.000000	724154158	0.995091	0	0.498589	0.019412	0.000077