#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00583/HGDP00583.cram --algo AlignmentStat HGDP/HGDP00583/QCmetrics/HGDP00583.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	393639608	393639608	1.000000	0	393106099	0.998645	58648243470	370174202	55466002956	53740413388	0.000000	0.005671	0.005068	0.000216	151.000000	391382456	0.995615	0	0.500000	0.017974	0.000004	
SECOND_OF_PAIR	393639608	393639608	1.000000	0	391410408	0.994337	57020159178	367589271	54026463287	49622869432	1.000000	0.012660	0.012052	0.000206	151.000000	391382456	0.999929	0	0.499469	0.019373	0.001159	
PAIR	787279216	787279216	1.000000	0	784516507	0.996491	115668402648	737763473	109492466243	103363282820	0.000000	0.009116	0.008513	0.000211	151.000000	782764912	0.997767	0	0.499735	0.018672	0.000581