#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00587/HGDP00587.cram --algo AlignmentStat HGDP/HGDP00587/QCmetrics/HGDP00587.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409367459	409367459	1.000000	0	409189808	0.999566	61152950045	384363804	57724307793	56189776057	0.000000	0.005347	0.004664	0.000220	151.000000	407642190	0.996218	0	0.500002	0.019790	0.000002	
SECOND_OF_PAIR	409367459	409367459	1.000000	0	407665148	0.995842	59553513427	381966714	56311268975	51553314668	1.000000	0.013116	0.012456	0.000206	151.000000	407642190	0.999944	0	0.499498	0.021295	0.000255	
PAIR	818734918	818734918	1.000000	0	816854956	0.997704	120706463472	766330518	114035576768	107743090725	0.000000	0.009180	0.008511	0.000213	151.000000	815284380	0.998077	0	0.499750	0.020541	0.000128