#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00595/HGDP00595.cram --algo AlignmentStat HGDP/HGDP00595/QCmetrics/HGDP00595.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	470108015	470108015	1.000000	0	469584658	0.998887	70152375016	438689058	65863345447	64238868328	0.000000	0.005431	0.004683	0.000224	151.000000	467949206	0.996517	0	0.499985	0.023147	0.000004	
SECOND_OF_PAIR	470108015	470108015	1.000000	0	467992348	0.995500	68673652618	436066068	64573727961	60540379461	0.000000	0.010477	0.009693	0.000215	151.000000	467949206	0.999908	0	0.499460	0.025273	0.000888	
PAIR	940216030	940216030	1.000000	0	937577006	0.997193	138826027634	874755126	130437073408	124779247789	0.000000	0.007927	0.007163	0.000220	151.000000	935898412	0.998210	0	0.499723	0.024208	0.000446