#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00599/HGDP00599.cram --algo AlignmentStat HGDP/HGDP00599/QCmetrics/HGDP00599.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	469306791	469306791	1.000000	0	468934694	0.999207	70155562635	440757880	66199455821	64652766604	0.000000	0.004871	0.004236	0.000213	151.000000	467170530	0.996238	0	0.499954	0.019309	0.000002	
SECOND_OF_PAIR	469306791	469306791	1.000000	0	467211820	0.995536	68691770772	438062205	64917277142	60984835866	0.000000	0.009923	0.009234	0.000206	151.000000	467170530	0.999912	0	0.499502	0.020887	0.000570	
PAIR	938613582	938613582	1.000000	0	936146514	0.997372	138847333407	878820085	131116732963	125637602470	0.000000	0.007370	0.006710	0.000209	151.000000	934341060	0.998071	0	0.499729	0.020097	0.000286