#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00599/HGDP00599.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00599/QCmetrics/HGDP00599.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 17.994 5.7131 18 3 0 0.18662 0.0018568 0.034381 0.002416 0.00015646 0.22543 0.99849 0.99384 0.96579 0.76481 0.35395 0.085865 0.015401 0.0030066 0.0015065 0.00089412 0.00059654 0.00043457 0.00033324 0.0002611 0.99465 23 coverage high_quality_coverage_count 0 230133 1 163441 2 159168 3 174401 4 209252 5 282136 6 414902 7 666304 8 1099651 9 1804002 10 2840530 11 4242065 12 5943561 13 7827217 14 9719332 15 11349897 16 12531890 17 13129115 18 13071541 19 12414691 20 11252427 21 9780700 22 8146487 23 6538839 24 5061384 25 3788760 26 2747993 27 1940059 28 1339839 29 901918 30 601818 31 399460 32 267392 33 182046 34 127273 35 93061 36 71019 37 56277 38 47157 39 39860 40 34689 41 30768 42 27557 43 24617 44 22872 45 20860 46 18900 47 17586 48 15704 49 14626 50 13243 51 12185 52 11144 53 10100 54 9379 55 8535 56 7957 57 7435 58 6727 59 6451 60 5825 61 5540 62 5056 63 4914 64 4521 65 4400 66 4080 67 3779 68 3674 69 3476 70 3297 71 3138 72 2824 73 2630 74 2421 75 2300 76 2177 77 2023 78 1967 79 1862 80 1794 81 1705 82 1688 83 1632 84 1573 85 1466 86 1390 87 1409 88 1354 89 1403 90 1355 91 1277 92 1199 93 1161 94 1075 95 1022 96 1015 97 969 98 916 99 984 100 882 101 857 102 854 103 831 104 750 105 743 106 703 107 658 108 675 109 616 110 570 111 617 112 537 113 525 114 527 115 520 116 531 117 488 118 472 119 485 120 435 121 415 122 407 123 421 124 384 125 402 126 367 127 371 128 380 129 345 130 359 131 340 132 329 133 300 134 319 135 347 136 327 137 320 138 333 139 325 140 363 141 341 142 308 143 323 144 354 145 331 146 335 147 289 148 302 149 287 150 256 151 270 152 256 153 255 154 225 155 254 156 237 157 243 158 250 159 225 160 234 161 238 162 234 163 216 164 204 165 222 166 211 167 220 168 196 169 205 170 196 171 197 172 190 173 162 174 183 175 192 176 164 177 137 178 156 179 146 180 151 181 132 182 150 183 151 184 123 185 171 186 155 187 151 188 121 189 146 190 132 191 129 192 102 193 120 194 107 195 119 196 102 197 109 198 116 199 118 200 125 201 103 202 121 203 92 204 116 205 105 206 107 207 105 208 116 209 113 210 72 211 84 212 64 213 97 214 101 215 85 216 98 217 84 218 77 219 82 220 93 221 104 222 90 223 85 224 72 225 73 226 84 227 71 228 68 229 69 230 52 231 66 232 53 233 51 234 52 235 49 236 33 237 48 238 45 239 46 240 65 241 55 242 48 243 53 244 61 245 46 246 46 247 39 248 47 249 63 250 3664