#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00600/HGDP00600.cram --algo AlignmentStat HGDP/HGDP00600/QCmetrics/HGDP00600.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	439413023	439413023	1.000000	0	438686511	0.998347	65577228777	410849031	61696203958	60193714520	0.000000	0.004997	0.004331	0.000216	151.000000	436811670	0.995726	0	0.499976	0.019792	0.000006	
SECOND_OF_PAIR	439413023	439413023	1.000000	0	436860618	0.994191	64096311119	408084895	60401175360	56528976639	0.000000	0.010605	0.009893	0.000208	151.000000	436811670	0.999888	0	0.499479	0.021667	0.001393	
PAIR	878826046	878826046	1.000000	0	875547129	0.996269	129673539896	818933926	122097379318	116722691159	0.000000	0.007769	0.007082	0.000212	151.000000	873623340	0.997803	0	0.499728	0.020728	0.000699